miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Cynodon dactylon
,
Eragrostis curvula
,
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST002587
species:
Saccharum officinarum
miRNA family:
MIR2504
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACCAAGTTTATAGAAAAA
miRNA*
TTTATCTGAACTTGGTCATAG
mismatches:
4
bulges:
0
View larger
pre-miRNA
AAGAACAATGTATGTCGATTTAGTTTGCTCCTAAGTGAAAGCTCTCTAACC
TTGACCAAGTTTATAGAAAAA
TACACCAAAATCTACAACATTAAATTAG
TTTAATTAAAAATCACCATAAAATGTCTTGTCAGTCTATTTATTTGATGTTCTAGATGTTAATATATT
TTTATCTGAACTTGGTCATAG
TTAGACGTGTT
TGACTTATGACCAAACTAAAACGACATACATTTTGGA
dot-bracket secondary structure
......(((((((((((.(((((((((.((.(((((..((((..((((((.
.((((((((((((...(((((
((.......(((((.((((((((((.((
(............((........))............))).)))))))))).))))).......))))
)))...))))))))))))..)
)))))...)))
).))))).)).))))))))).))))))))))).....
SIMILARITIES
miRBase
bdi-MIR5169
:
0.000000000000003
PMRD
sbi-miR437u
:
0.0000000000002
microPC
miR437
:
0.000000000003
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record